MirGeneDB ID | Sto-Mir-208-P2 |
Family name |
MIR-208 (all species) |
Seed |
UUAAGAC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-208-P2
Cfa-Mir-208-P2
Cpo-Mir-208-P2
Dno-Mir-208-P2
Dre-Mir-208-P2
Ete-Mir-208-P2a
Ete-Mir-208-P2b
Hsa-Mir-208-P2
Mdo-Mir-208-P2
Mml-Mir-208-P2
Mmu-Mir-208-P2
Ocu-Mir-208-P2
Rno-Mir-208-P2
Sha-Mir-208-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (miRNA_loci_genome) |
BFAA01271854.1: 421-480 [+]
|
Precursor (pre-Mir +30nt flank) |
CGUUACCUGCAGACAUUCCUCCAGACUGUCAGAUCUUUUGUUCUUUUUAAUAUUGAGUUACGAUAUGUUUAAGACGAACAGAAGAUUUUGCAGUUUGGGGGAUUAGCGCCUGGCCUGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUUACCUGCAGACAUU--| C U UAUUGAGU
CCUCCAGACUGU AGAUCUUUUGUUC UUUUAA U
GGGGGUUUGACG UUUAGAAGACAAG AGAAUU A
GAAGUCCGGUCCGCGAUUA^ U C UGUAUAGC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-208-P2_5p* |
MirBase accession | None |
Sequence |
0- AGAUCUUUUGUUCUUUUUAAUA -22
Get sequence
|
Mature sequence |
Sto-Mir-208-P2_3p |
MirBase accession | None |
Sequence |
37- UUUAAGACGAACAGAAGAUUUUG -60
Get sequence
|