MirGeneDB

MirGeneDB ID

Sto-Mir-142-v1

Family name MIR-142 (all species)
Seed AUAAAGU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-142-v2  Sto-Mir-142-v3  Sto-Mir-142-v4 
Orthologues Bta-Mir-142-v1  Cfa-Mir-142-v1  Cpo-Mir-142-v1  Dno-Mir-142-v1  Ete-Mir-142-v1  Hsa-Mir-142-v1  Mdo-Mir-142-v1  Mml-Mir-142-v1  Mmu-Mir-142-v1  Oan-Mir-142-v1  Ocu-Mir-142-v1  Rno-Mir-142-v1  Sha-Mir-142-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(miRNA_loci_genome)
BFAA01007505.1: 105407-105466 [-]
Precursor
(pre-Mir +30nt flank)
GAGGACCUAAUGAUAGACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCAUUCAACCCAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGCACUGUGAGCUUCUGAGAGAAGAC
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Structure
        10          20        30        40        50         
GAGGACCUAAUGAUAGA--|      G               A         UAAACCAU 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCACGU AGUAGGUAUUUCAUC UUUGUGAUG        C
CAGAAGAGAGUCUUCGAGU^      G               C         UGACCCAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Sto-Mir-142-v1_5p

MirBase accessionNone
Sequence
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Sto-Mir-142-v1_3p*

MirBase accessionNone
Sequence
39- UAGUGUUUCCUACUUUAUGGA -60
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