MirGeneDB ID | Sto-Mir-140-v2 |
Family name |
MIR-140 (all species) |
Seed |
ACCACAG |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-140-v1
|
Orthologues |
Aca-Mir-140-v2
Ami-Mir-140-v2
Bta-Mir-140-v2
Cfa-Mir-140-v2
Cli-Mir-140-v2
Cpi-Mir-140-v2
Cpo-Mir-140-v2
Dno-Mir-140-v2
Dre-Mir-140-v2
Ete-Mir-140-v2
Gga-Mir-140-v2
Hsa-Mir-140-v2
Mdo-Mir-140-v2
Mml-Mir-140-v2
Mmu-Mir-140-v2
Oan-Mir-140-v2
Ocu-Mir-140-v2
Rno-Mir-140-v2
Sha-Mir-140-v2
Tgu-Mir-140-v2
Xtr-Mir-140-v2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (miRNA_loci_genome) |
BFAA01000092.1: 252505-252566 [+]
|
Precursor (pre-Mir +30nt flank) |
UCCUGCAGCCUUUUUCACUCUGUGACCUACCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGCUGCUGAGAAUCUUCCUGCAUCAGUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCCUGCAGCCUUUUUCA-- U GA A-| A A UUACGU
CUC GU CCU CC GUGGUUUUACCCU UGGUAGG C
GAG CG GGA GG CACCAAGAUGGGA ACCAUCU A
AGUGACUACGUCCUUCUAA U UC CA^ - C UGUCGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sto-Mir-140-v2_5p* |
MirBase accession | None |
Sequence |
0- CAGUGGUUUUACCCUAUGGUAGG -23
Get sequence
|
Mature sequence |
Sto-Mir-140-v2_3p |
MirBase accession | None |
Sequence |
39- UACCACAGGGUAGAACCACGGAC -62
Get sequence
|