| MirGeneDB ID | Spu-Novel-4 |
|---|
| Family name |
SPU-NOVEL-4 (all species) |
|---|
| Seed |
AGAUCUA |
|---|
| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. purpuratus
|
|---|
| Node of Origin (family) |
S. purpuratus
|
|---|
Genome context
(Spur_5.0) |
AAGJ06000864.1: 1363762-1363838 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUACACAUGUGUUUUACAAUCUAUUUUUAGAAGAUCUAGCUCGUCCAGCAGCUCGGGUGGCGAAGUCUCUUCAAAUCUUUAGGCCGCUGUGUCGUGCUAGAUCUAUAUCAAAUGAAAAGAAAGAAAACAAAAUAUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUACACAUGUGUUUUACAAUCUAUUUUUAGA-- U UC-| A UCGGGUGGCGAAGU
AGAUCUAGC CG CAGC GC C
UCUAGAUCG GC GUCG CG U
CUUAUAAAACAAAAGAAAGAAAAGUAAACUAUA U UGU^ C GAUUUCUAAACUUC
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Spu-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAGAUCUAGCUCGUCCAGCAGC -22
Get sequence
|
|---|
| Star sequence |
Spu-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
54- CGCUGUGUCGUGCUAGAUCUAUA -77
Get sequence
|
|---|
