MirGeneDB

MirGeneDB ID

Spu-Novel-1-P1

Family name SPU-NOVEL-1 (all species)
Seed CGACUUC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Novel-1-P2 
Orthologues
Node of Origin (locus) S. purpuratus
Node of Origin (family) S. purpuratus
Genome context
(Spur_3.1)
Scaffold879: 42084-42146 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNNNNNNNNNNNNGGCUCAGCUGUCGACUUCCCUAGAGGGCAACAUGGAUUUCCCCAAAUGGUGUCGUUCUCGAGGGUAGUAGAUGGCUGAGCUGUUUUCAUGCAUCGCAGCAUCU
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Structure
        10        20          30        40        50        60 
NNNNNNNNNNNNNNNNNNNN--|           G   U    A      A   UGGAUUUC 
                      GGCUCAGCUGUC ACU CCCU GAGGGC ACA        \
                      UCGAGUCGGUAG UGA GGGA CUCUUG UGU        C
UCUACGACGCUACGUACUUUUG^           A   U    G      C   GGUAAACC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Novel-1-P1_5p

MirBase accessionNone
Sequence
0- UCGACUUCCCUAGAGGGCAACA -22
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Star sequence

Spu-Novel-1-P1_3p*

MirBase accessionNone
Sequence
41- UCGUUCUCGAGGGUAGUAGAUG -63
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