MirGeneDB

MirGeneDB ID

Spu-Mir-92-o57

Family name MIR-92 (all species)
Seed AUUGCAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Mir-92-o11  Spu-Mir-92-o12  Spu-Mir-92-o13  Spu-Mir-92-o55  Spu-Mir-92-o56  Spu-Mir-92-o58 
Orthologues Asu-Mir-92  Cel-Mir-92  Isc-Mir-92 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Bilateria
Genome context
(Spur_3.1)
Scaffold8342: 21943-22005 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCACCUACCUGGAGAAGACUGCUUCAUAUCGGUCGAGGCUAGUGUAAUUCUGUGACAGCUUUGCAGCAAGUAUUGCACUUACCCCGGCUGAUAUGUAGCAGUUACUUACAUCUUCUGAAAGU
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Structure
        10          20        30        40        50        60 
GUCACCUACCUGGAGAA--|      U           A  CU        U  GUGACAGC 
                   GACUGCU CAUAUCGGUCG GG  AGUGUAAU CU        \
                   UUGACGA GUAUAGUCGGC CC  UCACGUUA GA        U
UGAAAGUCUUCUACAUUCA^      U           C  AU        U  ACGACGUU 
 120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-92-o57_5p*

MirBase accessionNone
Sequence
0- CGGUCGAGGCUAGUGUAAUUCU -22
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Mature sequence

Spu-Mir-92-o57_3p

MirBase accessionNone
Sequence
41- UAUUGCACUUACCCCGGCUGAU -63
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