MirGeneDB

MirGeneDB ID

Spu-Mir-92-o55

Family name MIR-92 (all species)
Seed AUUGCAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Mir-92-o11  Spu-Mir-92-o12  Spu-Mir-92-o13  Spu-Mir-92-o56  Spu-Mir-92-o57  Spu-Mir-92-o58 
Orthologues Asu-Mir-92  Cel-Mir-92  Isc-Mir-92 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Bilateria
Genome context
(Spur_3.1)
Scaffold391: 433149-433217 [+] Ensembl
Clustered MiRNAs
(< 10kb from Mir-92-o55)
Mir-92-o12 Scaffold391: 440806-440873 [+] Ensembl
Mir-92-o13 Scaffold391: 442488-442553 [+] Ensembl
Mir-92-o11 Scaffold391: 442948-443012 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGGAACUUAUUCUUGAUUCAGACGCUUAGAUAGAGAUGUUUGCAGCUGCCGUGCAGUUAGCUUGUACAAUUCGGCAUUGCACUCAUCUCGGUCUGAACGACUGGAUCGCACUCUACGCAUACAUUC
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Structure
        10          20        30        40        50        60    
AGCUGGAACUUAUUCUU--|      A  C      A      UU     C    GUGCAGUUAG 
                   GAUUCAG CG UUAGAU GAGAUG  UGCAG UGCC          C
                   CUAGGUC GC AGUCUG CUCUAC  ACGUU ACGG          U
CUUACAUACGCAUCUCACG^      A  A      G      UC     -    CUUAACAUGU 
       120       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-92-o55_5p* (predicted)

MirBase accessionNone
Sequence
0- AGAUAGAGAUGUUUGCAGCUGCC -23
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Mature sequence

Spu-Mir-92-o55_3p

MirBase accessionNone
Sequence
47- CAUUGCACUCAUCUCGGUCUGA -69
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