MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-36-P21

Family name MIR-36 (all species)
Seed CACCGGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-36a
Paralogues Sme-Mir-36-P20  Sme-Mir-36-P22 
Orthologues Bge-Mir-36  Cbr-Mir-36-o21  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000019_dd_Smes_g4_19: 7234834-7234895 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P21)
Mir-36-P20 NNSW01000019_dd_Smes_g4_19: 7234307-7234370 [+] UCSC Ensembl
Mir-36-P21 NNSW01000019_dd_Smes_g4_19: 7234834-7234895 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAAAUACAUAUUUGUAGCCACAGUGUUUUGAUGCAUGCUACUUGGUUUUGUUGUUAUUAUAUUAACAUCACCGGGUAGACAUUCAUUAUACAACUGUUGUUUUAUCCUCAAUUCAUUUGA
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Structure
        10          20        30         40        50          
AUAAAAUACAUAUUUGU--   C     GUUU     C   -|        UU  UUGUUAU 
                   AGC ACAGU    UGAUG AUG CUACUUGGU  UG       \
                   UUG UGUCA    AUUAC UAC GAUGGGCCA  AC       U
AGUUUACUUAACUCCUAUU   U     ACAU     U   A^        CU  AAUUAUA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-36-P21_5p*

mirBase accessionMIMAT0003981
Sequence
0- UGAUGCAUGCUACUUGGUUUUG -22
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Mature sequence

Sme-Mir-36-P21_3p

mirBase accessionMIMAT0003982
Sequence
39- UCACCGGGUAGACAUUCAUUAUA -62
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