MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-279-P4

Family name MIR-279 (all species)
Seed GACUAGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-61a
Paralogues Sme-Mir-279-P5 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Dma-Mir-279-o4  Dpu-Mir-279-o4  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000252_dd_Smes_g4_252: 319043-319099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAUUUUUUAGAAUAGAAACUCUUGAUACAGUUUGUGAGUUUCUAGGCAUAUAGAUUUUUCUAUGACUAGAAAGUUCACUUACUGUUGUACGAGUUUUAAACUUCAUUCUGUUUUA
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Structure
        10          20        30        40         50       
UUCAUUUUUUAGAAUAG--      UUGAU     UU     -|      G    UAGA 
                   AAACUC     ACAGU  GUGAG UUUCUAG CAUA    U
                   UUUGAG     UGUCA  CACUU AAAGAUC GUAU    U
AUUUUGUCUUACUUCAAAU      CAUGU     UU     G^      A    CUUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-279-P4_5p*
mirBase accessionMIMAT0012105
Sequence 
0- AGUUUGUGAGUUUCUAGGCAUA -22
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Mature sequence

Sme-Mir-279-P4_3p
mirBase accessionMIMAT0003983
Sequence 
34- UGACUAGAAAGUUCACUUACUGU -57
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