MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-277-P6b

Family name MIR-277 (all species)
Seed AAAUGCA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-277d
Paralogues Sme-Mir-277-P6a  Sme-Mir-277-P7a  Sme-Mir-277-P7b 
Orthologues Aae-Mir-277  Bge-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6b  Cel-Mir-277  Cgi-Mir-277  Dan-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Efe-Mir-277  Esc-Mir-277  Hme-Mir-277  Isc-Mir-277  Lgi-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Tca-Mir-277 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000268_dd_Smes_g4_268: 448831-448887 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P6b)
Mir-277-P7b NNSW01000268_dd_Smes_g4_268: 448715-448777 [-] UCSC Ensembl
Mir-277-P6b NNSW01000268_dd_Smes_g4_268: 448831-448887 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUAUUUAAAUUUUUUAAGCAUCAAAAAUGUUGGUUAGUUGUGCAUUUUCAUUAAAUAUUAUGUAAAUGCAUUUAUCUGGCCAAGAAAUAGUUGCUUUAAUCGUAAUAAUAUUAUUA
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Structure
        10            20        30        40          50      
GGUAUUUAAAUUUUUUA----    UCAAAAAUG        UU--|       U  UUAA 
                     AGCA         UUGGUUAG    GUGCAUUU CA    A
                     UCGU         AACCGGUC    UACGUAAA GU    U
AUUAUUAUAAUAAUGCUAAUU    UGAUAAAG-        UAUU^       U  AUUA 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-277-P6b_5p*

mirBase accessionMIMAT0012128
Sequence
0- UUGGUUAGUUGUGCAUUUUCA -21
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Mature sequence

Sme-Mir-277-P6b_3p

mirBase accessionMIMAT0004024
Sequence
33- UAAAUGCAUUUAUCUGGCCAAGAA -57
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