MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-216-P2m

Family name MIR-216 (all species)
Seed AAUCUCA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-747
Paralogues Sme-Mir-216-P2l 
Orthologues Aae-Mir-216-P2  Asu-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cgi-Mir-216-P2  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Efe-Mir-216-P2  Hme-Mir-216-P2  Isc-Mir-216-P2  Lgi-Mir-216-P2  Tca-Mir-216-P2 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000007_dd_Smes_g4_7: 5198956-5199024 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2m)
Mir-216-P2m NNSW01000007_dd_Smes_g4_7: 5198956-5199024 [+] UCSC Ensembl
Mir-12-P11 NNSW01000007_dd_Smes_g4_7: 5199085-5199146 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAGACUCCAAUGUCUCAGUUCUGUUCAUAAUCUCAUCUGGUAAUUGAAGUGAUCUAUUUUUUAAAAAAAGAAACUUCAUUAUCAUUUCAGAUUGUAAUCGAAAUGAUUAGCUGUCUGUGAAUUAUG
Get precursor sequence
Structure
        10           20        30        40        50        60    
UUUUAGACUCCAAUGUC---|  G   U   C       CAUC       U     GAUCUAUUUU 
                    UCA UUC GUU AUAAUCU    UGGUAAU GAAGU          U
                    AGU AAG UAA UGUUAGA    ACUAUUA CUUCA          U
GUAUUAAGUGUCUGUCGAUU^  A   C   -       CUUU       -     AAGAAAAAAA 
       120       110       100         90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-216-P2m_5p

mirBase accessionMIMAT0004005
Sequence
0- UAAUCUCAUCUGGUAAUUGAAGU -23
Get sequence
Star sequence

Sme-Mir-216-P2m_3p*

mirBase accessionMIMAT0012117
Sequence
47- UUCAUUAUCAUUUCAGAUUGUA -69
Get sequence