Mir-184-P26

MirGeneDB ID

Sme-Mir-184-P26

Family name

MIR-184 (all species)

Seed

ACGGAGG

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-184

Paralogues

Sme-Mir-184-P27

Orthologues

Aae-Mir-184 Aca-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Lan-Mir-184 Lch-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmu-Mir-184 Npo-Mir-184 Oan-Mir-184 Obi-Mir-184-P26 Ocu-Mir-184 Ovu-Mir-184-P26 Pbv-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Rno-Mir-184 Sha-Mir-184 Sko-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Xtr-Mir-184

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000012_dd_Smes_g4_12: 7152795-7152862 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAAAAUGUACAAUUAAUGAUUUUCAUUAACUCCUUUGUGUAUCUCCGUUUCACAUUUAUUAUAUCAUUUAUACUGGACGGAGGUUUGCUAAGGAAUAUUUGAAAAUUGCGAACUACAAAUAUUAUCA

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Structure

        10          20        30        40        50        60   
UCAAAAUGUACAAUUAAU--|       UUAAC     U   U          CACAUUUAUUA 
                    GAUUUUCA     UCCUU GUG AUCUCCGUUU           U
                    UUAAAAGU     AGGAA CGU UGGAGGCAGG           A
ACUAUUAUAAACAUCAAGCG^       UUAUA     U   U          UCAUAUUUACU 
      120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Star sequence

Sme-Mir-184-P26_5p*

mirBase accession

MIMAT0012116

Sequence

0- CUCCUUUGUGUAUCUCCGUUUC -22

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Mature sequence

Sme-Mir-184-P26_3p

mirBase accession

MIMAT0004000

Sequence

46- GACGGAGGUUUGCUAAGGAAUA -68

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