MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-124-P36

Family name MIR-124 (all species)
Seed AAGGCAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-124e
Paralogues Sme-Mir-124-P31a  Sme-Mir-124-P31b  Sme-Mir-124-P32  Sme-Mir-124-P33  Sme-Mir-124-P34  Sme-Mir-124-P35 
Orthologues Aae-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Hme-Mir-124  Isc-Mir-124  Lan-Mir-124  Npo-Mir-124  Obi-Mir-124  Ovu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Sko-Mir-124  Spu-Mir-124  Tca-Mir-124  Xbo-Mir-124 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000020_dd_Smes_g4_20: 1711770-1711822 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUUUCAAUUCAAUAAAUUAUUCUACUGCCAUUCUCAGUUGGAGUCUUGAUAUGAUCUAUUAAGGCACGCUGUGAAUGCCAAGGAAUUUUAUUUCUCUUCUUUAUUAUUAU
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Structure
        10        20           30        40        50       
AAAAUUUCAAUUCAAUAAAUU---|    AC  C     U    U GA        AUG 
                        AUUCU  UG CAUUC CAGU G  GUCUUGAU   \
                        UAAGG  AC GUAAG GUCG C  CGGAAUUA   A
UAUUAUUAUUUCUUCUCUUUAUUU^    A-  C     U    - A-        UCU 
 110       100        90         80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-124-P36_5p*
mirBase accessionMIMAT0012138
Sequence 
0- CCAUUCUCAGUUGGAGUCUUGAU -23
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Mature sequence

Sme-Mir-124-P36_3p
mirBase accessionMIMAT0011239
Sequence 
32- UAAGGCACGCUGUGAAUGCCA -53
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