| MirGeneDB ID | Sha-Novel-4-P1b |
|---|
| Family name |
SHA-NOVEL-4 (all species) |
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| Seed |
UUCCCAA |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Novel-4-P1a
Sha-Novel-4-P2
Sha-Novel-4-P3
Sha-Novel-4-P4
Sha-Novel-4-P5a
Sha-Novel-4-P5b
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL867924.1: 27824-27887 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUCAGAACGGUAGACAUGGCAAUUGAAUCAGUGCCCAGUGUUUGAAAAAGAAAAGGAAUCCUCUUAGUCCACUUUCCCAAAACUAGGCACCGAUUCCGCUGCCGCCACCACCACACACCUCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACUCAGAACGGUAGACA--| AUU A C G AA AAAAGGAAUC
UGGCA GAAUC GUGCC AGU UUUG AAAG \
GCCGU CUUAG CACGG UCA AAAC UUUC C
CACUCCACACACCACCACC^ CGC C A - CC ACCUGAUUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Novel-4-P1b_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUGCCCAGUGUUUGAAAAAGA -22
Get sequence
|
|---|
| Mature sequence |
Sha-Novel-4-P1b_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUUCCCAAAACUAGGCACCGA -64
Get sequence
|
|---|
