| MirGeneDB ID | Sha-Novel-11-P1a-v1 |
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| Family name |
SHA-NOVEL-11 (all species) |
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| Seed |
GAGGUUU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Novel-11-P1a-v2
Sha-Novel-11-P1b-v1
Sha-Novel-11-P1b-v2
Sha-Novel-11-P2a-v1
Sha-Novel-11-P2a-v2
Sha-Novel-11-P2b-v1
Sha-Novel-11-P2b-v2
Sha-Novel-11-P3
Sha-Novel-11-P4
Sha-Novel-11-P5-v1
Sha-Novel-11-P5-v2
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL867904.1: 81071-81127 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGACAGUACCUCUGUUCCUGACUGCCUACUUGAGGUUUGAGCUACUGGCUACUUAUUUCUCUUGGUAGCCAGCAGCCAAACCUCAGUAGUAAGUCAGAAUGGCAACAAAGAGGACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGACAGUACCUCUGUUC---| GC U A A UAUU
CUGACU CUACU GAGGUUUG GCU CUGGCUACU U
GACUGA GAUGA CUCCAAAC CGA GACCGAUGG C
CACAGGAGAAACAACGGUAA^ AU - - C UUCU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-11-P1a-v1_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGUUUGAGCUACUGGCUACU -23
Get sequence
|
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| Star sequence |
Sha-Novel-11-P1a-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UAGCCAGCAGCCAAACCUCAGU -57
Get sequence
|
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