MirGeneDB

MirGeneDB ID

Sha-Mir-23-P1

Family name MIR-23 (all species)
Seed UCACAUU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-23a
Paralogues Sha-Mir-23-P2 
Orthologues Aca-Mir-23-P1  Ami-Mir-23-P1  Bta-Mir-23-P1  Cfa-Mir-23-P1  Cpi-Mir-23-P1  Cpo-Mir-23-P1  Dno-Mir-23-P1  Dre-Mir-23-P1  Ete-Mir-23-P1  Hsa-Mir-23-P1  Mdo-Mir-23-P1  Mml-Mir-23-P1  Mmu-Mir-23-P1  Oan-Mir-23-P1  Rno-Mir-23-P1  Sto-Mir-23-o1  Sto-Mir-23-P1  Xtr-Mir-23-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL7_traces)
GL841415.1: 820975-821032 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-23-P1)
Mir-23-P1 GL841415.1: 820975-821032 [+] UCSC Ensembl
Mir-24-P1 GL841415.1: 821300-821359 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGACCCAGCACCCCUGAGCCUUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGAUUACUGCCACAAAUCACAUUGCCAGGGAUUUCCAACUGACCACUGGCCCUGCUGCUGAAGCUGC
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Structure
        10        20         30         40        50        
CGACCCAGCACCCCUGAG  U-   C   C   -|        G    G     GAUUA 
                  CC  UGG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  GG  ACC GUC ACC UUAGGGACC UUAC CUAAA     U
CGUCGAAGUCGUCGUCCC  UC   A   A   U^        G    A     CACCG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-23-P1_5p*

MirBase accessionNone
Sequence
0- GGGGUUCCUGGGGAUGGGAUUU -22
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Mature sequence

Sha-Mir-23-P1_3p

MirBase accessionMIMAT0022786
Sequence
36- AUCACAUUGCCAGGGAUUUCCA -58
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