MirGeneDB

MirGeneDB ID

Sha-Mir-205-P1

Family name MIR-205 (all species)
Seed CCUUCAU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-205
Paralogues
Orthologues Aca-Mir-205-P1  Ami-Mir-205-P1  Bta-Mir-205-P1  Cfa-Mir-205-P1  Cli-Mir-205-P1  Cpi-Mir-205-P1  Cpo-Mir-205-P1  Dno-Mir-205-P1  Dre-Mir-205-P1  Ete-Mir-205-P1  Gga-Mir-205-P1  Hsa-Mir-205-P1  Mdo-Mir-205-P1  Mml-Mir-205-P1  Mmu-Mir-205-P1  Oan-Mir-205-P1  Ocu-Mir-205-P1  Rno-Mir-205-P1  Sto-Mir-205-P1  Tgu-Mir-205-P1a  Tgu-Mir-205-P1b  Xtr-Mir-205-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL7_traces)
GL856783.1: 365829-365887 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUCAAGAUGAUCCAUGAGUUUCUCUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUAUCUAAUCAGAUUUCAGUGGAGUGAAGCUUAAGAGGCAUGGAGUUGACUCAGCACAGCAGC
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Structure
        10        20          30        40        50         
AAGCUCAAGAUGAUCCAUGA--| U       UC           C        UCUCAU 
                      GU UCUCUUG  CUUCAUUCCAC GGAGUCUG      \
                      UA GGAGAAU  GAAGUGAGGUG CUUUAGAC      A
CGACGACACGACUCAGUUGAGG^ C       UC           A        UAAUCU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-205-P1_5p

MirBase accessionMIMAT0022812
Sequence
0- UCCUUCAUUCCACCGGAGUCUG -22
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Star sequence

Sha-Mir-205-P1_3p*

MirBase accessionNone
Sequence
37- GAUUUCAGUGGAGUGAAGCUUA -59
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