MirGeneDB

MirGeneDB ID

Sha-Mir-140-v1

Family name MIR-140 (all species)
Seed CCACAGG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-140
Paralogues Sha-Mir-140-v2 
Orthologues Aca-Mir-140-v1  Ami-Mir-140-v1  Bta-Mir-140-v1  Cfa-Mir-140-v1  Cli-Mir-140-v1  Cpi-Mir-140-v1  Cpo-Mir-140-v1  Dno-Mir-140-v1  Dre-Mir-140-v1  Ete-Mir-140-v1  Gga-Mir-140-v1  Hsa-Mir-140-v1  Mdo-Mir-140-v1  Mml-Mir-140-v1  Mmu-Mir-140-v1  Oan-Mir-140-v1  Ocu-Mir-140-v1  Rno-Mir-140-v1  Sto-Mir-140-v1  Tgu-Mir-140-v1  Xtr-Mir-140-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL7_traces)
GL834769.1: 1909560-1909621 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-140-v1)
Mir-140-v1 GL834769.1: 1909560-1909621 [+] UCSC Ensembl
Mir-140-v2 GL834769.1: 1909560-1909621 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUGUGUGUGUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACUGGGGCGCUCUCGGCAUCGGAGG
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Structure
        10          20         30        40        50        60
UGUGUGUGUGUGUCUCU--   U        -| A             A      GUUACGU 
                   CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAG       C
                   GGG CAUAGGAC GG CACCAAGAUGGGA ACCAUC       A
GGAGGCUACGGCUCUCGCG   U        A^ -             C      UUGUCGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-140-v1_5p*

MirBase accessionNone
Sequence
0- CAGUGGUUUUACCCUAUGGUAG -22
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Mature sequence

Sha-Mir-140-v1_3p

MirBase accessionMIMAT0022778
Sequence
40- ACCACAGGGUAGAACCACGGAC -62
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