Mir-362-P1

MirGeneDB ID

Rno-Mir-362-P1

Family name

MIR-362 (all species)

Seed

AUCCUUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-362

Paralogues

Rno-Mir-362-P3 Rno-Mir-362-P4

Orthologues

Bta-Mir-362-P1 Cfa-Mir-362-P1 Cpo-Mir-362-P1 Dno-Mir-362-P1 Ete-Mir-362-P1 Hsa-Mir-362-P1 Mml-Mir-362-P1 Mmu-Mir-362-P1 Ocu-Mir-362-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 16117174-16117232 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P1)

Mir-188-P2 chrX: 16109880-16109938 [+] UCSC Ensembl
Mir-188-P1 chrX: 16110280-16110339 [+] UCSC Ensembl
Mir-362-P1 chrX: 16117174-16117232 [+] UCSC Ensembl
Mir-362-P3 chrX: 16117887-16117946 [+] UCSC Ensembl
Mir-362-P4 chrX: 16121342-16121402 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGAGUCUUCUUGCUUGCUCCGCCUCUCGAAUCCUUGGAACCUAGGUGUGAAUGCUGCUUCAGUGCAACACACCUGUUCAAGGAUUCAAAGAGGCUGAGCCUCGUCUGCGUGUUUGGC

Get precursor sequence

Structure

        10         20         30        40        50        60 
CCUGAGUCUUCUUGCUU-    C      C-|          ACC        AA   UGCU 
                  GCUC GCCUCU  GAAUCCUUGGA   UAGGUGUG  UGC    \
                  CGAG CGGAGA  CUUAGGAACUU   GUCCACAC  ACG    U
CGGUUUGUGCGUCUGCUC    U      AA^          ---        A-   UGAC 
       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-362-P1_5p

mirBase accession

MIMAT0012828

Sequence

0- AAUCCUUGGAACCUAGGUGUGAAUGC -26

Get sequence

Proposed targets

microrna.org: MIMAT0012828
TargetScanVert: rno-miR-362-5p
miRDB: MIMAT0012828

Co-mature sequence

Rno-Mir-362-P1_3p

mirBase accession

MIMAT0017357

Sequence

37- AACACACCUGUUCAAGGAUUCA -59

Get sequence

Proposed targets

TargetScanVert: rno-miR-362-3p
miRDB: MIMAT0017357