MirGeneDB

MirGeneDB ID

Rno-Mir-29-P1b2

Family name MIR-29 (all species)
Seed AGCACCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-29c-2
Paralogues Rno-Mir-29-P1a  Rno-Mir-29-P1b1  Rno-Mir-29-P2a  Rno-Mir-29-P2b3  Rno-Mir-29-P2b4 
Orthologues Aca-Mir-29-P1b  Ami-Mir-29-P1b  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bta-Mir-29-P1b  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cgi-Mir-29-P1  Cin-Mir-29-P1  Cli-Mir-29-P1b  Cpi-Mir-29-P1b  Cpo-Mir-29-P1b  Cte-Mir-29-P1  Dno-Mir-29-P1b  Ete-Mir-29-P1b  Gga-Mir-29-P1b  Hsa-Mir-29-P1b  Isc-Mir-29-P1  Lgi-Mir-29-P1  Mdo-Mir-29-P1b  Mml-Mir-29-P1b  Mmu-Mir-29-P1b  Oan-Mir-29-P1b  Ocu-Mir-29-P1b  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Sha-Mir-29-P1b  Sko-Mir-29-P1  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tgu-Mir-29-P1b  Xtr-Mir-29-P1b 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Bilateria
Genome context
(rn6)
chr1: 38238921-38238978 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-29-P1b2)
Mir-29-P2b4 chr1: 38238386-38238449 [+] UCSC Ensembl
Mir-29-P1b2 chr1: 38238921-38238978 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACCACUGGUCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCACCAGCCUCAGA
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Structure
        10            20         30        40        50         
ACACCACUGGUCCAUCU----      -| GGC           UCC       C   GUCUG 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA     \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU     U
AGACUCCGACCACGAAAAGGG      A^ ---           UUU       -   GUUUU 
      110       100        90           80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-29-P1b2_5p*

MirBase accessionMIMAT0003154
Sequence
0- ACCGAUUUCUCCUGGUGUUCAGA -23
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Mature sequence

Rno-Mir-29-P1b2_3p

MirBase accessionMIMAT0000803
Sequence
36- UAGCACCAUUUGAAAUCGGUUA -58
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