MirGeneDB

MirGeneDB ID

Rno-Mir-219-P1

Family name MIR-219 (all species)
Seed GAUUGUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-219a-1
Paralogues Rno-Mir-219-P2  Rno-Mir-219-P2-as 
Orthologues Aae-Mir-219  Aca-Mir-219-P1  Ami-Mir-219-P1  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P1  Cfa-Mir-219-P1  Cgi-Mir-219  Cin-Mir-219  Cpi-Mir-219-P1  Cpo-Mir-219-P1  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P1  Dpu-Mir-219  Dre-Mir-219-P1a  Ete-Mir-219-P1  Hsa-Mir-219-P1  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P1  Mml-Mir-219-P1  Mmu-Mir-219-P1  Mmu-Mir-219-P1-as  Ocu-Mir-219-P1  Pfl-Mir-219  Pmi-Mir-219  Sha-Mir-219-P1  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P1-v1  Sto-Mir-219-P1-v2  Tca-Mir-219 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr20: 3816184-3816247 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUCUCCCUGUCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUCUGGCUCCGGCCGAGAGUUGCGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGGGGGAGAG
Get precursor sequence
Structure
        10           20        30        40        50        60 
GCUUCUCUCCCUGUCCC---|   C       CU   U     A            AGUCUCU 
                    GGGC GCGGCUC  GAU GUCCA ACGCAAUUCUCG       G
                    CCCG CGCCGAG  CUG CAGGU UGCGUUGAGAGC       G
GAGAGGGGGAGCUCCAAACC^   C       CC   -     C            CGGCCUC 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-219-P1_5p

MirBase accessionMIMAT0000889
Sequence
0- UGAUUGUCCAAACGCAAUUCUCG -23
Get sequence
Validated targets microrna.org: MIMAT0000889
TargetScanVert: rno-miR-219a-5p
miRDB: MIMAT0000889
Star sequence

Rno-Mir-219-P1_3p*

MirBase accessionMIMAT0004741
Sequence
41- AGAGUUGCGUCUGGACGUCCCGA -64
Get sequence
Validated targets microrna.org: MIMAT0004741
TargetScanVert: rno-miR-219a-1-3p
miRDB: MIMAT0004741