MirGeneDB

MirGeneDB ID

Rno-Mir-10-P3a

Family name MIR-10 (all species)
Seed CCCUGAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-125b-1
Paralogues Rno-Mir-10-P1a-v1  Rno-Mir-10-P1a-v2  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Rno-Mir-10-P2a  Rno-Mir-10-P2b  Rno-Mir-10-P2c  Rno-Mir-10-P3b  Rno-Mir-10-P3c 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3a  Ami-Mir-10-P3a  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bta-Mir-10-P3a  Cfa-Mir-10-P3a  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3a  Cpi-Mir-10-P3a  Cpo-Mir-10-P3a  Cte-Mir-10-P3  Dan-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3a  Dpu-Mir-10-P3  Dre-Mir-10-P3a1  Dre-Mir-10-P3a2  Ete-Mir-10-P3a  Gga-Mir-10-P3a  Hsa-Mir-10-P3a  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Mdo-Mir-10-P3a  Mml-Mir-10-P3a  Mmu-Mir-10-P3a  Oan-Mir-10-P3a  Ocu-Mir-10-P3a  Pfl-Mir-10-P3  Pmi-Mir-10-P3  Sha-Mir-10-P3a  Sko-Mir-10-P3  Spu-Mir-10-P3  Sto-Mir-10-P3a  Tca-Mir-10-P3  Tgu-Mir-10-P3a  Xtr-Mir-10-P3a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Eumetazoa
Genome context
(rn6)
chr8: 45798274-45798335 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGGAAGAAUUGUGUUGCGCUCCCCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCCUUUGCAUCGCUGAAGGAA
Get precursor sequence
Structure
        10            20         30        40        50        60
AAAGGAAGAAUUGUGUU----   -|  CCCU   UC  UG   C           AUGUUUAC 
                     GCG CUC    CAG  CC  AGA CCUAACUUGUG        C
                     UGC GAG    GUC  GG  UCU GGAUUGGGCAC        G
AAGGAAGUCGCUACGUUUCCG   U^  C---   GA  GU   C           CUAAAUUU 
120       110       100           90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-10-P3a_5p

MirBase accessionMIMAT0000830
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Validated targets microrna.org: MIMAT0000830
TargetScanVert: rno-miR-125b-5p
miRDB: MIMAT0000830
Star sequence

Rno-Mir-10-P3a_3p*

MirBase accessionMIMAT0004730
Sequence
40- ACGGGUUAGGCUCUUGGGAGCU -62
Get sequence
Validated targets microrna.org: MIMAT0004730
TargetScanVert: rno-miR-125b-1-3p
miRDB: MIMAT0004730