MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-126-P4

Family name MIR-126 (all species)
Seed CGUACCG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-126
Paralogues
Orthologues Cmi-Mir-126-P4  Ebu-Mir-126-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046073.1: 1914711-1914768 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUGUUUGGGAAAUCCGGCAGUGCCCCCGCGUUAUUUCCCGGGGUACGCGCCGCGCUCUGUCGCCUCGUACCGUGAGUAAUAACGUGGGGUCCCUGCUGCUGCUGCUACGGGGUUAC
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Structure
        10          20        30        40        50         
GGGUGUUUGGGAAAUCC--     UGC            UCC  G      C-| CGCGC 
                   GGCAG   CCCCGCGUUAUU   CG GGUACG  GC     \
                   UCGUC   GGGGUGCAAUAA   GU CCAUGC  CG     U
CAUUGGGGCAUCGUCGUCG     CCU            UGA  G      UC^ CUGUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-126-P4_5p*

mirBase accessionNone
Sequence
0- CGUUAUUUCCCGGGGUACGCGC -22
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Mature sequence

Pma-Mir-126-P4_3p

mirBase accessionMIMAT0019448
Sequence
36- UCGUACCGUGAGUAAUAACGUG -58
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