MirGeneDB ID | Pbv-Mir-1662 |
Family name |
MIR-1662 (all species) |
Seed |
UGACAUC |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
pbv-mir-1662
|
Paralogues |
|
Orthologues |
Aca-Mir-1662
Ami-Mir-1662
Cli-Mir-1662
Cpi-Mir-1662
Gga-Mir-1662
Gja-Mir-1662-P3
Gja-Mir-1662-P4
Mun-Mir-1662
Spt-Mir-1662
Tgu-Mir-1662
Xla-Mir-1662-P1
Xla-Mir-1662-P2
Xtr-Mir-1662
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE959870.1: 33153-33212 [+]
|
Precursor (pre-Mir +30nt flank) |
UGAUGUCGUGCAAAGCUGUGCUCUGUGGGUUUGACAUCAUCAUACUUGGGAUGUGCUAACAUUAAAACCCCAAGCAGGUUGAUGUCUGGCCCAAGAUGGCUGCUGCCCGUUCAUGUUUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAUGUCGUGCAAAGCUGU- CUG-| UU UCAUA AUGUGCUA
GCU UGGGU GACAUCA CUUGGG A
CGG ACCCG CUGUAGU GAACCC C
AGUUUGUACUUGCCCGUCGU UAGA^ GU UGGAC CAAAAUUA
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pbv-Mir-1662_5p (predicted) |
mirBase accession | MIMAT0039082 |
Sequence |
0- UUGACAUCAUCAUACUUGGGAU -22
Get sequence
|
Star sequence |
Pbv-Mir-1662_3p* |
mirBase accession | None |
Sequence |
39- CCAAGCAGGUUGAUGUCUGGC -60
Get sequence
|