MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-1662

Family name MIR-1662 (all species)
Seed UGACAUC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-1662
Paralogues
Orthologues Aca-Mir-1662  Ami-Mir-1662  Cli-Mir-1662  Cpi-Mir-1662  Gga-Mir-1662  Gja-Mir-1662-P3  Gja-Mir-1662-P4  Mun-Mir-1662  Spt-Mir-1662  Tgu-Mir-1662  Xla-Mir-1662-P1  Xla-Mir-1662-P2  Xtr-Mir-1662 
Node of Origin (locus) Tetrapoda
Node of Origin (family) Tetrapoda
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE959870.1: 33153-33212 [+]
Precursor
(pre-Mir +30nt flank)
UGAUGUCGUGCAAAGCUGUGCUCUGUGGGUUUGACAUCAUCAUACUUGGGAUGUGCUAACAUUAAAACCCCAAGCAGGUUGAUGUCUGGCCCAAGAUGGCUGCUGCCCGUUCAUGUUUGA
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Structure
        10         20         30        40        50         
UGAUGUCGUGCAAAGCUGU-   CUG-|    UU       UCAUA      AUGUGCUA 
                    GCU    UGGGU  GACAUCA     CUUGGG        A
                    CGG    ACCCG  CUGUAGU     GAACCC        C
AGUUUGUACUUGCCCGUCGU   UAGA^    GU       UGGAC      CAAAAUUA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Mature sequence

Pbv-Mir-1662_5p (predicted)

mirBase accessionMIMAT0039082
Sequence
0- UUGACAUCAUCAUACUUGGGAU -22
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Star sequence

Pbv-Mir-1662_3p*

mirBase accessionNone
Sequence
39- CCAAGCAGGUUGAUGUCUGGC -60
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