MirGeneDB ID | Ovu-Novel-86 |
Family name |
OCT-NOVEL-86 (all species) |
Seed |
GCACGAC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Obi-Novel-86
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Octopus
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01026631.1: 9666-9723 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCGUUAUGAAGGCUGCACCAUGGGUUAGUUUGCACGACGCAGUUGUAUCACGGCGUCUCAUCAGCAGCGAUCAAUUGAACCGUGUUAACUGGCCCUAAGACGGCGACUCUGGACGACC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCGUUAUGAAGGCUGCACCAU--| U ACG U ACG CGUCU
GGGUUAGUU GCACG CAGUUG AUC G \
CCCGGUCAA UGUGC GUUAAC UAG C C
CCAGCAGGUCUCAGCGGCAGAAU^ U CAA - CGA GACUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-86_5p |
mirBase accession | None |
Sequence |
0- UGCACGACGCAGUUGUAUCACGG -23
Get sequence
|
Star sequence |
Ovu-Novel-86_3p* |
mirBase accession | None |
Sequence |
36- GCGAUCAAUUGAACCGUGUUAA -58
Get sequence
|