MirGeneDB ID | Ovu-Novel-71-v1 |
Family name |
OCT-NOVEL-71 (all species) |
Seed |
CUGAGUU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Novel-71-v2
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Orthologues |
Obi-Novel-71-v1
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Octopus
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01063117.1: 62344-62399 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUCCAAGGAAUAGUUUACCGUAAAAAUGUUUCUGAGUUCCUCAGUCAGUGAAAUAUGCCAAUGCACUGAUUGGAGAAGGCAGAAAACAUUAUUAUGGAAUUUUGACGUAAACCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCAAGGAAUAGUUUA-- A -| AG CU AAAUAU
CCGUAA AAUG UUUCUG UUC CAGUCAGUG \
GGUAUU UUAC AAAGAC AAG GUUAGUCAC G
CAACCAAAUGCAGUUUUAA A A^ GG AG GUAACC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | No |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-71-v1_5p |
mirBase accession | None |
Sequence |
0- UCUGAGUUCCUCAGUCAGUGA -21
Get sequence
|
Star sequence |
Ovu-Novel-71-v1_3p* |
mirBase accession | None |
Sequence |
33- CACUGAUUGGAGAAGGCAGAAAA -56
Get sequence
|