| MirGeneDB ID | Ovu-Novel-53 |
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| Family name |
COL-NOVEL-53 (all species) |
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| Seed |
GAUCGGU |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-53
Obi-Novel-53
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01077014.1: 217-277 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGCCUGUAUAAGAAUAAAAGAGUGUCCAAAGAUCGGUACAGUGGCUUUGGCUUGAAUAUAACAAUACCAAAGCUUCUCGUACCCAUCCUUGGAAAUUUCUUUAUAAACGACCACGACUAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGCCUGUAUAAGAAUA- UG- A C -| U CUUGAAU
AAAGAG UCCAA GAU GGUAC AG GGCUUUGG A
UUUCUU AGGUU CUA CCAUG UC UCGAAACC U
CAUCAGCACCAGCAAAUA UAA C C C^ U AUAACAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-53_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAUCGGUACAGUGGCUUUGGC -22
Get sequence
|
|---|
| Star sequence |
Ovu-Novel-53_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CAAAGCUUCUCGUACCCAUCCUU -61
Get sequence
|
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