MirGeneDB ID | Ovu-Novel-51 |
Family name |
COL-NOVEL-51 (all species) |
Seed |
CCCUGCC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-51
Obi-Novel-51
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01066201.1: 65212-65271 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUCACGUGCAAAAGUGUGCCUUUUCACUGGUCCCUGCCUCACUCUAGUUACAUGUACACUCUGCAAUGUAGCUGGCUGAGACAAGAGACCAGGCGUGGCCCUAAUCACACUCUUUGUUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCACGUGCAAAAGUGU----| UUUUCA C GC- CU GUACA
GCC CUGGUC CU CUCA CUAGUUACAU C
CGG GACCAG GA GAGU GGUCGAUGUA U
GCUUGUUUCUCACACUAAUCC^ UGCG-- A ACA C- ACGUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
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Motifs | UG at 5p(-14) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-51_5p |
mirBase accession | None |
Sequence |
0- UCCCUGCCUCACUCUAGUUACAU -23
Get sequence
|
Star sequence |
Ovu-Novel-51_3p* |
mirBase accession | None |
Sequence |
38- UAGCUGGCUGAGACAAGAGACC -60
Get sequence
|