MirGeneDB ID | Ovu-Novel-5 |
Family name |
CEP-NOVEL-5 (all species) |
Seed |
GUUCCUA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-5
Npo-Novel-5
Obi-Novel-5
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Node of Origin (locus) |
Cephalopoda
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Node of Origin (family) |
Cephalopoda
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01019738.1: 354-413 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUAUUCUGUUACCAAACUUUUCUAUCAUAUUCGGUCCUUUUUGGGACCUCGUUUCAAUCUAACGGAAGUUCCUAGAUGGACUGAGAAUGGUAGGUAAGUUCGACCACCAUAGCACCCU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAUAUUCUGUUACCAA--| U A U U C GUUUCA
ACUU UCUAUCAU UUCGGUCC UUU GGGAC UC A
UGAA GGAUGGUA GAGUCAGG AGA CCUUG AG U
UCCCACGAUACCACCAGCU^ U A U U A GCAAUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-5_5p* |
mirBase accession | None |
Sequence |
0- AUUCGGUCCUUUUUGGGACCUC -22
Get sequence
|
Mature sequence |
Ovu-Novel-5_3p |
mirBase accession | None |
Sequence |
38- AGUUCCUAGAUGGACUGAGAAU -60
Get sequence
|