MirGeneDB ID | Ovu-Novel-48 |
Family name |
COL-NOVEL-48 (all species) |
Seed |
GCAAAGG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Novel-48
Obi-Novel-48
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01054850.1: 245808-245865 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCAUAGAACGAAUAGGCUUUUCUGCACCCAGCAAAGGGCUUGACGCUAGCGCUUAUCCCCGACAGCUAGUGACAAAGCCUUUGUGGGCAGCGGUGAGCCAUAACACGAGGACAUAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCAUAGAACGAAUAGG---| UU A- G G GA- GCUUAU
CUU CUGC CCCA CAAAGG CUU CGCUAGC C
GAG GGCG GGGU GUUUCC GAA GUGAUCG C
AGAUACAGGAGCACAAUACC^ U- AC - - ACA ACAGCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Ovu-Novel-48_5p |
mirBase accession | None |
Sequence |
0- AGCAAAGGGCUUGACGCUAGCG -22
Get sequence
|
Star sequence |
Ovu-Novel-48_3p* |
mirBase accession | None |
Sequence |
36- CUAGUGACAAAGCCUUUGUGGG -58
Get sequence
|