MirGeneDB ID | Ovu-Novel-45 |
Family name |
COL-NOVEL-45 (all species) |
Seed |
GCUGGAA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Novel-45
Obi-Novel-45
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01046228.1: 8621-8679 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGUCAGUUGCCAUCUUGUUCAUUCGGAACUGCUGGAAAGCAGAGGAAGACUUUUGUUGCAUGCAUAGAUUCCGCUUCUCUCCGGUGAUUUCUGAUGAACUAAAUUCUCUUGGCUAACU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGUCAGUUGCCAUCUU--| C CU A C A GA UUUGUU
GUUCAUU GGAA GCUGGA AG AG GGAA CU G
CAAGUAG CUUU UGGCCU UC UC CCUU GA C
UCAAUCGGUUCUCUUAAAU^ U AG C U G A- UACGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Ovu-Novel-45_5p |
mirBase accession | None |
Sequence |
0- UGCUGGAAAGCAGAGGAAGACU -22
Get sequence
|
Star sequence |
Ovu-Novel-45_3p* |
mirBase accession | None |
Sequence |
37- GAUUCCGCUUCUCUCCGGUGAU -59
Get sequence
|