MirGeneDB ID | Ovu-Novel-44 |
Family name |
COL-NOVEL-44 (all species) |
Seed |
UCGGCUC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-44
Obi-Novel-44
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01043304.1: 2036500-2036563 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGUAGGAAUGGUAAGAUAUUAAAUAUGAUGAAGAAUCACCUUAAGCUGUGGUCGUAUUUCCACGAGUGCUCGAUCGGCUCAAGGCAGUUCUUCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUAGGAAUGGUAAGAUAUUAAAUAUGA--| CA A GU GUAUUUCC
UGAAGAAU CCUU AGCU GGUC A
GCUUCUUG GGAA UCGG CUAG C
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNA^ AC C -- CUCGUGAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Despite being templated, this sequence might be monoadenylated at its very 3' end. |
3' NTU |
No
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Motifs | No |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-44_5p* |
mirBase accession | None |
Sequence |
0- AAGAAUCACCUUAAGCUGUGGUC -23
Get sequence
|
Mature sequence |
Ovu-Novel-44_3p |
mirBase accession | None |
Sequence |
42- AUCGGCUCAAGGCAGUUCUUCG -64
Get sequence
|