| MirGeneDB ID | Ovu-Novel-42 |
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| Family name |
COL-NOVEL-42 (all species) |
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| Seed |
CUGUGCA |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-42
Obi-Novel-42
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01038317.1: 235710-235783 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAAGUCACAGAGUAAACCAAUUAAAGUGCCCUGUGCAAAGAGUCGUUAAGCUGUUCUAGCCAUACUUCCAAAUGACUGGCUUAGCAACUUCAUUGCAUGGAGUUCUUCCUUUGGUGCUGACACCACCCACAAG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
UGAAGUCACAGAGUAAA-- UUA U C A-| C UGUUCUAGCCAUA
CCAA AAG GC CUGUGCAA GAGU GUUAAGC \
GGUU UUC UG GGUACGUU UUCA CGAUUCG C
GAACACCCACCACAGUCGU UCC U A AC^ A GUCAGUAAACCUU
130 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-42_5p |
| mirBase accession | None |
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| Sequence |
0- CCUGUGCAAAGAGUCGUUAAGC -22
Get sequence
|
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| Star sequence |
Ovu-Novel-42_3p* |
| mirBase accession | None |
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| Sequence |
51- UUAGCAACUUCAUUGCAUGGAGU -74
Get sequence
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