MirGeneDB ID | Ovu-Novel-41 |
Family name |
COL-NOVEL-41 (all species) |
Seed |
UCCGGAG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-41
Obi-Novel-41
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01063127.1: 10728-10784 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGAUACAAACCUUUGAUGCGAUGUGAGUGGUUCCGGAGUUUCACACCCAUCAGUCACAACAGUCGAUGGGUGUGAACCUCUAGAAAAUCUCACAUUGGUCUUUCACCAACCGACAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAUACAAACCUUUGAUG--| UGG CG U AGUCAC
CGAUGUGAG UUC GAG UUCACACCCAUC \
GUUACACUC AAG CUC AAGUGUGGGUAG A
UAACAGCCAACCACUUUCUG^ UAA AU C CUGACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-41_5p |
mirBase accession | None |
Sequence |
0- UUCCGGAGUUUCACACCCAUCA -22
Get sequence
|
Star sequence |
Ovu-Novel-41_3p* |
mirBase accession | None |
Sequence |
35- AUGGGUGUGAACCUCUAGAAAA -57
Get sequence
|