MirGeneDB ID | Ovu-Novel-4 |
Family name |
CEP-NOVEL-4 (all species) |
Seed |
CGGUCAU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-4
Npo-Novel-4
Obi-Novel-4
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Node of Origin (locus) |
Cephalopoda
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Node of Origin (family) |
Cephalopoda
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01019681.1: 310692-310749 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACUGUCCAGAAAAGACAAAAUUGAUUGCAGUAAGGCAGAUAUAGGGCCCGUGUAGCUGAAAUUCCGUCGGUCAUAUGUCUGCCUGAUUUCAGUCAAUUUAAUAUUCAUCACGACAUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUGUCCAGAAAAGACA--| C A G CG UAGCU
AAAUUGAUUG AGU AGGCAGAUAUA GGCC UG G
UUUAACUGAC UUA UCCGUCUGUAU CUGG GC A
CAUACAGCACUACUUAUAA^ U G A CU CUUAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-4_5p* |
mirBase accession | None |
Sequence |
0- UAAGGCAGAUAUAGGGCCCGUG -22
Get sequence
|
Mature sequence |
Ovu-Novel-4_3p |
mirBase accession | None |
Sequence |
36- UCGGUCAUAUGUCUGCCUGAUU -58
Get sequence
|