MirGeneDB 2.1

MirGeneDB ID

Ovu-Novel-39

Family name COL-NOVEL-39 (all species)
Seed GCCUUGC
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Novel-39  Obi-Novel-39 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01036038.1: 215236-215296 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGACGGACAUAAAGAAAUGUCUUUCAUCCAGGGCAACUCUGGCUGGGUCAUCGUGAAAUAUUUGCUAUGCCUUGCCUUCUCUUGCCUUGGCUGAGAUUGACAGAUAACGGCAGACAGUAG
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Structure
        10        20          30        40         50          
UUGACGGACAUAAAGAAA    --     U         CUCU-|  U   U   CGUGAAA 
                  UGUC  UUUCA CCAGGGCAA     GGC GGG CAU       \
                  ACAG  AGAGU GGUUCCGUU     CCG UCC GUA       U
GAUGACAGACGGCAAUAG    UU     C         CUCUU^  U   -   UCGUUUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc
Star sequence

Ovu-Novel-39_5p*

mirBase accessionNone
Sequence
0- AGGGCAACUCUGGCUGGGUCAUC -23
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Mature sequence

Ovu-Novel-39_3p

mirBase accessionNone
Sequence
38- UGCCUUGCCUUCUCUUGCCUUGG -61
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