MirGeneDB 2.1

MirGeneDB ID

Ovu-Novel-38-v2

Family name COL-NOVEL-38 (all species)
Seed UUCAUCA
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues Ovu-Novel-38-v1 
Orthologues Esc-Novel-38-v2  Obi-Novel-38-v2 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01067064.1: 772-832 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGAUGUUGAUCCAACAGAUAGAGCCAGUACAGCCUUGCAGAUGGUCAAAUACGUUUUAGGAAGACAUUUCAUCAUUCACAAGGCUGCACUGUCGCUGUCUACAUCAACAUUAGAGCCUU
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Structure
        10          20        30        40        50          
CUGGAUGUUGAUCCAAC--|     AGC    A        CA      C    ACGUUUU 
                   AGAUAG   CAGU CAGCCUUG  GAUGGU AAAU       \
                   UCUGUC   GUCA GUCGGAAC  UUACUA UUUA       A
UUCCGAGAUUACAACUACA^     GCU    C        AC      C    CAGAAGG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc
Star sequence

Ovu-Novel-38-v2_5p*

mirBase accessionNone
Sequence
0- ACAGCCUUGCAGAUGGUCAAAUA -23
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Mature sequence

Ovu-Novel-38-v2_3p

mirBase accessionNone
Sequence
38- UUUCAUCAUUCACAAGGCUGCAC -61
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