MirGeneDB 2.1

MirGeneDB ID

Ovu-Novel-20-P1

Family name COL-NOVEL-20 (all species)
Seed UCGGGAG
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues Ovu-Novel-20-P2 
Orthologues Esc-Novel-20  Obi-Novel-20-P1 
Node of Origin (locus) Octopus
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01008960.1: 6297-6357 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAAGGCUGUAUAAAUUGCAUGCACAGUCAUCUGACUUAACUCCUGCAAGGCUAAUUAAAACACAUCCUCGGGAGAGAAGUGAGAUGGCGUGCAUUAGCUUUCGAAACUUCAACAAGGA
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Structure
        10         20          30        40        50        60 
AGAAAAGGCUGUAUAAAUU-  --|     A       G    AA      CA   CUAAUUA 
                    GC  AUGCAC GUCAUCU ACUU  CUCCUG  AGG       \
                    CG  UACGUG CGGUAGA UGAA  GAGGGC  UCC       A
AGGAACAACUUCAAAGCUUU  AU^     -       G    GA      --   UACACAA 
 .       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc
Star sequence

Ovu-Novel-20-P1_5p*

mirBase accessionNone
Sequence
0- CAUCUGACUUAACUCCUGCAAGGC -24
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Mature sequence

Ovu-Novel-20-P1_3p

mirBase accessionNone
Sequence
39- CUCGGGAGAGAAGUGAGAUGGC -61
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