MirGeneDB ID | Ovu-Novel-11 |
Family name |
CEP-NOVEL-11 (all species) |
Seed |
GGUUUUG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Npo-Novel-11
Obi-Novel-11
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Node of Origin (locus) |
Cephalopoda
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Node of Origin (family) |
Cephalopoda
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01076294.1: 178113-178172 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCAAUAAUGUGAGUUUUGCCCCAGUGGAGCUGGUUUUGUGAGAUGUUCAUUGGUUACAUAAAAUAUUCAGUGACCAUCUCUAAAACUAACUUUCCUGGUGGUCAUAACAACUUCAUAUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAAUAAUGUGAGUUUU- -| UG C U U UUACAU
GCC CCAG GAG UGGUUUUG GAGAUG UCAUUGG \
UGG GGUC UUC AUCAAAAU CUCUAC AGUGACU A
CAUAUACUUCAACAAUAC U^ CU A - C UAUAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-11_5p |
mirBase accession | None |
Sequence |
0- UGGUUUUGUGAGAUGUUCAUUGG -23
Get sequence
|
Star sequence |
Ovu-Novel-11_3p* |
mirBase accession | None |
Sequence |
38- AGUGACCAUCUCUAAAACUAAC -60
Get sequence
|