MirGeneDB ID | Ovu-Novel-10 |
Family name |
CEP-NOVEL-10 (all species) |
Seed |
UGGCGGA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-10
Npo-Novel-10
Obi-Novel-10
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Node of Origin (locus) |
Cephalopoda
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Node of Origin (family) |
Cephalopoda
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01062601.1: 247990-248050 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUGCUGACCAACAACUAGCACUGCAAGAGUGGUGGGCAACAAUUCCACCAGGACUGUCCCACCGUCCUCCUGGCGGAUUUGAUGCCACGGCGAAUGCAGCUGCUCCGGGAAUUCACAGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGCUGACCAACAACUA- -| AGA G G A U A CUGUCC
GCA CUGCA GU GUGG CA CAA UCC CCAGGA C
CGU GACGU CG CACC GU GUU AGG GGUCCU A
GAAGACACUUAAGGGCCU C^ AAG G - A U C CCUGCC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-10_5p* |
mirBase accession | None |
Sequence |
0- GGUGGGCAACAAUUCCACCAGGA -23
Get sequence
|
Mature sequence |
Ovu-Novel-10_3p |
mirBase accession | None |
Sequence |
39- CUGGCGGAUUUGAUGCCACGGC -61
Get sequence
|