MirGeneDB ID | Ovu-Mir-216-P2j |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Mir-216-P2k
|
Orthologues |
Aae-Mir-216-P2
Asu-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Cgi-Mir-216-P2
Dan-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Efe-Mir-216-P2
Hme-Mir-216-P2
Isc-Mir-216-P2
Lgi-Mir-216-P2
Npo-Mir-216-P2j
Obi-Mir-216-P2j
Tca-Mir-216-P2
|
Node of Origin (locus) |
Cephalopoda
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Node of Origin (family) |
Bilateria
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01022029.1: 191981-192040 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AAACCACUCUUUGAUUGACAGGUGCUUGUGUAAUCUCAGCUGGUAAUAUAUGAGUGGUUCAAUCUCUCACCGUUACUUGCUGUGGUUGAACUAUCACCUUGCCAAAACAUCUCAACNNNN
Get precursor sequence
|
Structure | 10 20 30 40 50
AAACCACUCUUUGAUUGAC--| CUU G U U AUA GUGGUU
AGGUG GU UAAUC CAGC GGUAAU UGA \
UCCAC CA GUUGG GUCG UCAUUG ACU C
NNNNCAACUCUACAAAACCGU^ UAU A U U CC- CUCUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Mir-216-P2j_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAUAUAUGA -23
Get sequence
|
Star sequence |
Ovu-Mir-216-P2j_3p* |
mirBase accession | None |
Sequence |
37- CACCGUUACUUGCUGUGGUUGAA -60
Get sequence
|