MirGeneDB ID | Ovu-Mir-2-o21 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Mir-2-o20-v1
Ovu-Mir-2-o20-v2
Ovu-Mir-2-o22a
Ovu-Mir-2-o22b
Ovu-Mir-2-o22c
Ovu-Mir-2-o22d
Ovu-Mir-2-o22e
Ovu-Mir-2-o23-v1
Ovu-Mir-2-o23-v2
Ovu-Mir-2-o24
|
Orthologues |
Esc-Mir-2-o21
Npo-Mir-2-o21
Obi-Mir-2-o21
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Protostomia
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01057295.1: 23087-23152 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUUUUAUUGUUUUGUCUGCCAUGUCUAUUACUGACCAAGUGGUUGUGAAUGUGCUGCUAAAUUGGAUUUUCAUAUCACAGCCUGCUUGGAUCAGUAAUAUACUUGGUGCUCCAACACCUUGGGAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUAUUGUUUUGUCU-- U C - -| A CUGCUAAA
GCCA GU UAUUACUGA CCAAGU GGUUGUGA UGUG \
UGGU CA AUAAUGACU GGUUCG CCGACACU AUAC U
UUAGGGUUCCACAACCUCG U U A U^ - UUUUAGGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Mir-2-o21_5p* |
mirBase accession | None |
Sequence |
0- CUGACCAAGUGGUUGUGAAUGUG -23
Get sequence
|
Mature sequence |
Ovu-Mir-2-o21_3p |
mirBase accession | None |
Sequence |
42- UAUCACAGCCUGCUUGGAUCAGUA -66
Get sequence
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