MirGeneDB ID | Ocu-Mir-28-P3 |
Family name |
MIR-28 (all species) |
Seed |
AACUAGA |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-708
|
Paralogues |
Ocu-Mir-28-P1
Ocu-Mir-28-P2
|
Orthologues |
Bta-Mir-28-P3
Cfa-Mir-28-P3
Cpo-Mir-28-P3
Dno-Mir-28-P3
Ete-Mir-28-P3
Hsa-Mir-28-P3
Mml-Mir-28-P3
Mmu-Mir-28-P3
Rno-Mir-28-P3
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chr1: 137399785-137399853 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACUGCCGUGUAUGAAAUGGUAACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUGAAUGACGUGCACGCGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGGCCUCACCCUAGUCAUCUCUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACUGCCGUGUAUGAAAU--| AA A A C GGGGUGAAUGAC
GGU CUGCCCUC AGGAGCUUACA UCUAG UG \
CCG GACGGGAG UCUUCGAGUGU AGAUC AC G
UCUCUCUACUGAUCCCACU^ GG A C A ACAAGCGCACGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-28-P3_5p* |
mirBase accession | MIMAT0048561 |
Sequence |
0- AAGGAGCUUACAAUCUAGCUGGG -23
Get sequence
|
Mature sequence |
Ocu-Mir-28-P3_3p |
mirBase accession | MIMAT0048562 |
Sequence |
46- CAACUAGACUGUGAGCUUCUAGA -69
Get sequence
|