| MirGeneDB ID | Ocu-Mir-28-P2 |
|---|
| Family name |
MIR-28 (all species) |
|---|
| Seed |
CGAGGAG |
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| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-151
|
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| Paralogues |
Ocu-Mir-28-P1
Ocu-Mir-28-P3
|
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| Orthologues |
Bta-Mir-28-P2
Cfa-Mir-28-P2
Cpo-Mir-28-P2
Dno-Mir-28-P2
Ete-Mir-28-P2
Hsa-Mir-28-P2
Mml-Mir-28-P2
Mmu-Mir-28-P2
Rno-Mir-28-P2
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(oryCun2_add) |
chrUn0252: 213334-213390 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACAAAGACGCCUGAGCCACUGUUCCUGCCCUCGAGGAGCUCACAGUCUAGUAUGUCUCAUCCCCUACUAGACUGAAGCUCCUUGAGGACAGGGAUCGUCCUCCUCACCUCAGUGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAAAGACGCCUGAGCC--| U C CA UGUCU
AC GUUCCUG CCUCGAGGAGCU CAGUCUAGUA C
UG UAGGGAC GGAGUUCCUCGA GUCAGAUCAU A
GUCGUGACUCCACUCCUCC^ C A A- CCCCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The highest expression of the 3p arm has a 1 nt addition of an "A." However when seen the 3' offset reads suggests that this is the correct Drosha cut. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Ocu-Mir-28-P2_5p |
| mirBase accession | MIMAT0048265 |
|---|
| Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
Get sequence
|
|---|
| Star sequence |
Ocu-Mir-28-P2_3p* |
| mirBase accession | MIMAT0048266 |
|---|
| Sequence |
36- CUAGACUGAAGCUCCUUGAGG -57
Get sequence
|
|---|
