MirGeneDB

MirGeneDB ID

Ocu-Mir-140-v1

Family name MIR-140 (all species)
Seed CCACAGG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-140
Paralogues Ocu-Mir-140-v2 
Orthologues Aca-Mir-140-v1  Ami-Mir-140-v1  Bta-Mir-140-v1  Cfa-Mir-140-v1  Cli-Mir-140-v1  Cpi-Mir-140-v1  Cpo-Mir-140-v1  Dno-Mir-140-v1  Dre-Mir-140-v1  Ete-Mir-140-v1  Gga-Mir-140-v1  Hsa-Mir-140-v1  Mdo-Mir-140-v1  Mml-Mir-140-v1  Mmu-Mir-140-v1  Oan-Mir-140-v1  Rno-Mir-140-v1  Sha-Mir-140-v1  Sto-Mir-140-v1  Tgu-Mir-140-v1  Xtr-Mir-140-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(oryCun2)
chr5: 25337165-25337226 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-140-v1)
Mir-140-v1 chr5: 25337165-25337226 [+] UCSC Ensembl
Mir-140-v2 chr5: 25337165-25337226 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGCCUGUGUCUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACUGGGGCACCCUCUGCGUCGAAGG
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Structure
        10          20         30        40        50        60
CCUGCCUGUGUCUCUCU--   U        -| A             A      GUUACGU 
                   CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAG       C
                   GGG CAUAGGAC GG CACCAAGAUGGGA ACCAUC       A
GGAAGCUGCGUCUCCCACG   U        A^ -             C      UUGUCGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-140-v1_5p*

MirBase accessionMIMAT0048241
Sequence
0- CAGUGGUUUUACCCUAUGGUAG -22
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Mature sequence

Ocu-Mir-140-v1_3p

MirBase accessionMIMAT0048242
Sequence
40- ACCACAGGGUAGAACCACGGAC -62
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