| MirGeneDB ID | Obi-Novel-78 |
|---|
| Family name |
OCT-NOVEL-78 (all species) |
|---|
| Seed |
GUAGCCA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Novel-78
|
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| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ417300: 623953-624011 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGCCUCACCCAGUCCGUGCCUGGCCAAGCUGUAGCCACCUCGCUCCGCAGACGUUCUCACGCACCGUCCGCAGGCGAAGUGAUACAUUCGAUCCAAAACUUCUUCCUGCAGGACAACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGCCUCACCCAGUCCGUGCC--| CCAAGC GC C CC A UUCUC
UGG UGUA CAC UCGCU GC GACG \
ACC ACAU GUG AGCGG CG CUGC A
ACAACAGGACGUCCUUCUUCAAA^ UAGCUU A- A A- C CACGC
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-78_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUAGCCACCUCGCUCCGCAGACG -24
Get sequence
|
|---|
| Star sequence |
Obi-Novel-78_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UCCGCAGGCGAAGUGAUACAUU -59
Get sequence
|
|---|
