| MirGeneDB ID | Obi-Novel-59 |
|---|
| Family name |
OCT-NOVEL-59 (all species) |
|---|
| Seed |
UUCCGUA |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ovu-Novel-59
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ416662: 704300-704354 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGAAUGUCAUUCGGUAUGUACAUCGGCUAUUUCCGUACGUAGCACAUAUGUAUGUUUUGAACAUAUAAACUCCAUACGGUUAUAGCUUGUGUAUAUUUUUCAUCAUAUUCUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGAAUGUCAUUCGGUA--| C UU CGU CAC AUGU
UGUACAU GGCUAU CCGUA AG AUAUGU \
AUAUGUG UCGAUA GGCAU UC UAUACA U
UGUUCUUAUACUACUUUUU^ U UU ACC AAA AGUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-59_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUCCGUACGUAGCACAUAUGU -22
Get sequence
|
|---|
| Star sequence |
Obi-Novel-59_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UAUAAACUCCAUACGGUUAUA -55
Get sequence
|
|---|
