MirGeneDB ID | Obi-Novel-56 |
Family name |
OCT-NOVEL-56 (all species) |
Seed |
GCCCUAU |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Ovu-Novel-56
|
Node of Origin (locus) |
Octopus
|
Node of Origin (family) |
Octopus
|
Genome context (PRJNA270931_OBI) |
KQ420857: 10180-10240 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUUUUAGGAAUCUAUUUUAGACACUGCUCUGCCCUAUAAAUGGUCCCCGUGUUAAUAUAUAUAUAACGGGAAUCACUUAUAUAGGGUGUAUGCCCUAUAAAUGGUCCCCGUGUUAAUAUAUAUAUAACGGGAAUCACUUAUAUAGGGUGUAGGAAUGUCUUUAUACACAACUUCUUGAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUUUUAGGAAUCUAUUUU--| CUG CUGCCCUAUAAAUGGUCCCCGUGUUAAUAU
AGACA CU A
UCUGU GG U
UAAAGUUCUUCAACACAUAUU^ AA- AUGUGGGAUAUAUUCACUAAGGGCAAUAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Novel-56_5p* |
mirBase accession | None |
Sequence |
38- GGGAAUCACUUAUAUAGGGUGUA -61
Get sequence
|
Mature sequence |
Obi-Novel-56_3p |
mirBase accession | None |
Sequence |
0- UGCCCUAUAAAUGGUCCCCGU -21
Get sequence
|