| MirGeneDB ID | Obi-Novel-53 |
|---|
| Family name |
COL-NOVEL-53 (all species) |
|---|
| Seed |
GAUCGGU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
Esc-Novel-53
Ovu-Novel-53
|
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| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
LGKD01689117: 164-224 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGCCUGUAUAAGAAUAAAAGAGGGUCCAAAGAUCGGUACAGUGGCUUUGGCUUGAAUAUAACAAUACCAAAGCUUCUCGUACCCAUCCUUGGAAACUUCUUUAUGAACGACCACACCUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCCUGUAUAAGAAUA- G- A C -| U CUUGAAU
AAAGAGG UCCAA GAU GGUAC AG GGCUUUGG A
UUUCUUC AGGUU CUA CCAUG UC UCGAAACC U
CAUCCACACCAGCAAGUA AA C C C^ U AUAACAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Novel-53_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAUCGGUACAGUGGCUUUGGC -22
Get sequence
|
|---|
| Star sequence |
Obi-Novel-53_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CAAAGCUUCUCGUACCCAUCCUU -61
Get sequence
|
|---|
