MirGeneDB ID | Obi-Novel-52 |
Family name |
COL-NOVEL-52 (all species) |
Seed |
UUUCCCG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Esc-Novel-52
Ovu-Novel-52
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (PRJNA270931_OBI) |
KQ416705: 1984392-1984454 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGCAACAGAAGUUUCAUGAUUAUUGUCAUUUUUUCCCGAAGUUGCGAAUCUGCAAUUAGAAUAUUACAGAGAUUUGCCACUUCGUGAGAAUUGUGACGUUAUAUUCCUAGCAGCAAUGUAACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCAACAGAAGUUUCAUGAUUAU-- U-| C U GCAAUUAG
UGUCAU UUUUC CGAAGU GCGAAUCU A
GCAGUG AAGAG GCUUCA CGUUUAGA A
CCAAUGUAACGACGAUCCUUAUAUU UU^ U C GACAUUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Obi-Novel-52_5p |
mirBase accession | None |
Sequence |
0- UUUUCCCGAAGUUGCGAAUCUG -22
Get sequence
|
Star sequence |
Obi-Novel-52_3p* (predicted) |
mirBase accession | None |
Sequence |
40- GAUUUGCCACUUCGUGAGAAUUG -63
Get sequence
|